<?xml version="1.0" encoding="utf-8" ?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom" xmlns:r="https://r-universe.dev"><channel><title>kahkengwong.r-universe.dev</title><link>https://kahkengwong.r-universe.dev</link><description>Recent package updates in kahkengwong</description><generator>R-universe</generator><image><url>https://github.com/kahkengwong.png</url><title>R packages by kahkengwong</title><link>https://kahkengwong.r-universe.dev</link></image><lastBuildDate>Tue, 27 Oct 2026 13:14:45 GMT</lastBuildDate><item><title>[kahkengwong] cepip 0.1.0</title><author>kahkeng3@gmail.com (Kah Keng Wong)</author><description>Implements the cell explanatory power with inflection
point (CEP-IP) framework for single-cell co-expression
analysis. A generalized additive model (GAM) fitted by
restricted maximum likelihood (REML) with a penalized residual
sum of squares (PRSS) search over the basis dimension relates a
gene of interest to the mean of its partner genes. Cells are
ranked by their explanatory power, and the inflection point is
the first negative-to-positive zero crossing of a residual GAM.
Optional extensions are the Spearman-Kendall cell-level score
(SKCS) and the copula monotone recovery filter (CMRF), which
recovers cells near the module through a tolerance band and a
repeated stratified k-fold cross-validation gate. Downstream
helpers give per-donor module fractions, paired donor-level
differential expression and donor-level association models.
CEP-IP is described in Wong (2026)
&lt;doi:10.1016/j.cmpb.2026.109372&gt;.</description><link>https://github.com/r-universe/kahkengwong/actions/runs/41047905858</link><pubDate>Tue, 27 Oct 2026 13:14:45 GMT</pubDate><r:package>cepip</r:package><r:version>0.1.0</r:version><r:status>success</r:status><r:repository>https://kahkengwong.r-universe.dev</r:repository><r:upstream>https://github.com/kahkengwong/cepip</r:upstream><r:article><r:source>cepip.Rmd</r:source><r:filename>cepip.html</r:filename><r:title>Getting started with cepip</r:title><r:created>2026-10-19 20:04:09</r:created><r:modified>2026-10-19 23:33:53</r:modified></r:article></item></channel></rss>